Hi Alex, I added an option to the ChimeraX view zalign command so you can use two sets of atoms, for example, view zalign ligand inFrontOf ~ligand Here is another example showing chain B in front of a multi-chain structure #1 view zalign /B infrontof #1 It will be in tomorrow's ChimeraX builds dated September 6, 2023. Tom
On Sep 5, 2023, at 7:04 AM, Alexander Hung Lee via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hello everyone,
In old Chimera, I was able to center the ligand to the foreground of view using "align ligand ~ligand" no matter the orientation, if the ligand is in view or not. Is there a comparable way in ChimeraX? The same command gives "expected a keyword" and using "view ligand" or "view sel-residues zalign sel" does not bring it to foreground if it's behind something else.
Thanks, Alex _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu <mailto:chimerax-users@cgl.ucsf.edu> To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu <mailto:chimerax-users-leave@cgl.ucsf.edu> Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/