6 Feb
2026
6 Feb
'26
9 p.m.
Dear ChimeraX community, I am trying to make a figure to show the loop movement between two conformations of the same protein. For that, I would like to use a worm representation following these steps: -Trim residues so they all match in length between both models. -Matchmaker to align them -Calculate RMSD -... Next? From here, I would like to compute the RMSD value for each residue pair and use it to generate a worm representation; however, I cannot find any information about how to do this in ChimeraX. Is there any manual that I am missing? I appreciate any feedback that you may provide. Looking for your response. Best, Victor Ruiz