ChimeraX distributions include Python so you just want to install pandas into the ChimeraX Python. This involves running the ChimeraX Python and using pip install. Here is how I do that on Mac.

$ ~/Desktop/ChimeraX.app/Contents/bin/python3.8 -m pip install pandas

On Windows or Linux it would be similar. We should have a ChimeraX command to install PyPi packages but don't have that yet.

Tom

On Jun 9, 2021, at 3:09 AM, Lagerwaard, I.M. (Ilse) via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hello everyone,

Is it possible to use the pandas package in ChimeraX? I tried opening a Python script containing the line ‘import pandas’, but I get the error: ‘ModuleNotFoundError: No module named 'pandas'’.

Kind regards,
Ilse
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