Hi Yong Liu,

  The code I gave you makes an image for every chain of a structure.  Here is a version of the code chain_images2.py defining the chainimages command that allows you to specify the chains you want images for

chainimages #1/A,B,C

I added that code the the ChimeraX Recipes page

https://rbvi.github.io/chimerax-recipes/chain_images/chain_images.html

For the coloring part, you could try to add that or you could simply color the structure before hand:

color #1 blue
color #1/A pink
color #1/B gold

  Tom