Sorry, that was only one of the problems.  As you can see from the log,
when you open your file in ChimeraX, there are many bad PDB records. 
See
https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/framepdbintro.html
for details about the format, or the full PDB format documentation at
https://www.wwpdb.org/documentation/file-format.  There are also lots of
duplicate atom serial numbers that confuse things.

     -- Greg

On 10/4/22 13:52, Greg Couch via ChimeraX-users wrote:
> The coordinates are in the wrong columns for your HETATM residues.
> Remove the spaces after HETATM.
>
>     -- Greg
>
> On 10/4/22 13:19, Dr. Eddie via ChimeraX-users wrote:
>> Hi all,
>> I've got a pdb and I can't seem to get ChimeraX to recognize the
>> ligand (resname STR) at the end of the pdb. I've modified the ATOM to
>> be HETATM but it still does not show up. I hide solvent and the
>> lipids and I know where it should be (from seeing it in vmd) but only
>> a void is there. Any ideas what is wrong with the pdb?
>> Thanks,
>> Eddie
>>
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