On 3/24/20 2:22 PM, Eric Pettersen wrote:
I mentioned awhile back that I was working on a replacement for the Open/Save/DataFormat bundle_info tags. In the replacement scheme, this will be possible by specifying the ‘dataFormat’ keyword, /e.g./ open long-ass-url data pdb.
OK, in that case it's probably easiest for me to wait until that's rolled out.
I should note that the retrieved file is actually in HTML with the PDB data embedded between <PRE> </PRE> tags, so the PDB reader does a lot of complaining about “Bad PDB record <HTML>” and so forth, but the structure does open.
Oh yes, that's right (although I don't recall Chimera ever complaining about it). I should be able to fix that at the server side.
Also, the structure has a blank chain ID, which is ugly to use in commands.
Right, thanks for the reminder! That's probably true for 99% of ModBase structures, but I'll tweak our pipeline for new structures at least. Ben -- ben@salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle