Hi Jonathan,

So if you open a structure such as 1www, are the missing-structure pseudobonds displayed?  If they are, then I would need access to one of your PDB files (or part of of one) that demonstrates the problem -- which you could send to me directly.

--Eric

Eric Pettersen

UCSF Computer Graphics Lab

On Jan 11, 2023, at 2:35 AM, Jonathan Jih via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hello ChimeraX team,

I'm having quite a bit of trouble displaying missing structure dashed lines when my models are shown in cartoon mode. This is despite the "missing structure" sub-model box being ticked in the model panel.

I recall finding a workaround for this nearly a year ago on ChimeraX 1.3, but I cannot for the life of me remember how I did so (now using ChimeraX 1.5). Interestingly, old sessions that I saved in 1.3 and 1.4 with whatever workaround I applied back then display the missing structure dashed lines properly in 1.5. However, opening the exact same pdb files from those older sessions in 1.5 yields no dashed lines in cartoon mode. Full atom mode appears fine.

I also found this thread (https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2022-February/003273.html), which seems to indicate the issue has been fixed, so not sure if I'm just doing something wrong? 

My OS is Windows 11 if that matters. Thanks in advance for the help!

Jonathan

--

Biochemistry, Biophysics, and Structural Biology (BBSB)

Molecular Biology Institute, University of California, Los Angeles

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