Alex, My SEQCROW plugin adds a selector for everything on the same fragment as the current selection. It only looks across bonds, not pseudobonds (e.g. metal coordination or H-bonds). The selector is `connected`, so you'd run `select @{atom_name}; select connected`. If you want to do this interactively, it also adds a mouse mode that lets you click on a fragment to select it. You would need to restart ChimeraX after installing for the mouse mode menu options to show up. Plugins can be installed via Tools -> More Tools... on the ChimeraX menu. Best, Tony On Tue, Sep 10, 2024 at 1:43 PM Alexander Lee via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Hi! I want to select all covalently bonded atoms to my selected atom. Is this possible? Currently, I'm using the command
select @{atom_name}; select zone select 2
It works, but I'm worried about accidentally catching any stray unconnected atoms when doing this in batches of pdbs. Thanks! _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/