Hi Vincent, The "pbond" command is only in version 1.8 or newer, according to the Change Log. Maybe what you have is too old, so get a newer ChimeraX. <https://www.rbvi.ucsf.edu/trac/ChimeraX/wiki/ChangeLog> What you said should work if those atoms actually exist and the model is not hidden. Similar commands work just fine for me, e.g. open 2gbp pbond #1/A:13@O #1/A:153@O reveal true color magenta dashes 1 cartoon suppress false ("cartoon suppress false" allows showing backbone atoms at same time as cartoon) I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 10, 2024, at 6:38 AM, Vincent CHAPTAL via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi,
I've been playing a lot with the commands but I can't seem to get it right. I'd like to display a line between 2 atoms in a model.
I tried: pbond #2.1:940@O #2.1:472@O reveal true color blue dashes 1 (and variations around it) but I got an error that pbond or pseudobond are unknown commands.
I also played around with distance: distance #2.1:940@O #2.1:472@O hide #4.1 color #4 blue distance style #4 dashes 0
but the distance does not appear on my screen.
Could you help me work this out? Thank you Vincent
-- Vincent Chaptal, PhD Director of GdR APPICOM Drug Resistance and Membrane Proteins Lab
MMSB -UMR5086 7 passage du Vercors 69007 LYON FRANCE +33 4 37 65 29 01 http://www.appicom.cnrs.fr http://mmsb.cnrs.fr/en/
_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/