Installing ChimeraX on Ubuntu 16.04 or openSuse Leap 15.2
Hello, I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success. Is it possible? If so, what would be the procedure? Thanks, Miguel
ChimeraX 1.4 (and the 1.5 release candidate) needs Ubuntu 20 or newer. So the procedure for Ubuntu is to first update the operating system. Then install ChimeraX. Unfortunately, we don't support openSUSE. But I was able to get the RHEL 8 rpm to appear to work on openSUSE 15.4. So, after downloading ucsf-chimerax-1.4-1.el8.x86_64.rpm: sudo zypper install ~/Downloads/ucsf-chimerax-1.4-1.el8.x86_64.rpm then skip the missing cario-gobject (since I installed Xfce instead of Gnome). Then it complains that the package header is not signed. Ignore that. Then, not all of the dependencies are there. Fix the missing libGLU.so with: sudo zypper install libGLU1 then fix the fact that openSUSE has libffi.so.7 and ChimeraX is expecting libffi.so.6 with: sudo ln -s /usr/lib64/libffi.so.7 /usr/libexec/UCSF-ChimeraX/lib/libffi.so.6 And after all that, I was able to run /usr/bin/chimerax. There were some warnings and errors in the terminal window, but I was able to open an mmCIF file from the PDB. So not a complete test, but a good start. HTH, Greg On 10/18/2022 6:55 AM, Miguel via ChimeraX-users wrote:
Hello,
I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success.
Is it possible? If so, what would be the procedure?
Thanks, Miguel
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Thank you for your answer. I will give it a try. I have also tried to install ChimeraX on a VirtualBox machine with Ubuntu 22 a first time, and Windows the second time. It did not work. I guess ChimeraX cannot be installed in virtualbox machines. Could you confirm it? Thanks once again, Miguel On 19/10/22 6:58, Greg Couch wrote:
ChimeraX 1.4 (and the 1.5 release candidate) needs Ubuntu 20 or newer. So the procedure for Ubuntu is to first update the operating system. Then install ChimeraX.
Unfortunately, we don't support openSUSE. But I was able to get the RHEL 8 rpm to appear to work on openSUSE 15.4. So, after downloading ucsf-chimerax-1.4-1.el8.x86_64.rpm:
sudo zypper install ~/Downloads/ucsf-chimerax-1.4-1.el8.x86_64.rpm
then skip the missing cario-gobject (since I installed Xfce instead of Gnome). Then it complains that the package header is not signed. Ignore that. Then, not all of the dependencies are there. Fix the missing libGLU.so with:
sudo zypper install libGLU1
then fix the fact that openSUSE has libffi.so.7 and ChimeraX is expecting libffi.so.6 with:
sudo ln -s /usr/lib64/libffi.so.7 /usr/libexec/UCSF-ChimeraX/lib/libffi.so.6
And after all that, I was able to run /usr/bin/chimerax. There were some warnings and errors in the terminal window, but I was able to open an mmCIF file from the PDB. So not a complete test, but a good start.
HTH,
Greg
On 10/18/2022 6:55 AM, Miguel via ChimeraX-users wrote:
Hello,
I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success.
Is it possible? If so, what would be the procedure?
Thanks, Miguel
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Hi Miguel, I don't know if it is the same thing as virtual box, but use on a virtual machine is not supported. See "System Requirements": <https://www.rbvi.ucsf.edu/chimerax/system_requirements.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 19, 2022, at 1:13 PM, Miguel via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Thank you for your answer. I will give it a try.
I have also tried to install ChimeraX on a VirtualBox machine with Ubuntu 22 a first time, and Windows the second time. It did not work. I guess ChimeraX cannot be installed in virtualbox machines. Could you confirm it?
Thanks once again,
Miguel
On 19/10/22 6:58, Greg Couch wrote:
ChimeraX 1.4 (and the 1.5 release candidate) needs Ubuntu 20 or newer. So the procedure for Ubuntu is to first update the operating system. Then install ChimeraX.
Unfortunately, we don't support openSUSE. But I was able to get the RHEL 8 rpm to appear to work on openSUSE 15.4. So, after downloading ucsf-chimerax-1.4-1.el8.x86_64.rpm:
sudo zypper install ~/Downloads/ucsf-chimerax-1.4-1.el8.x86_64.rpm
then skip the missing cario-gobject (since I installed Xfce instead of Gnome). Then it complains that the package header is not signed. Ignore that. Then, not all of the dependencies are there. Fix the missing libGLU.so with:
sudo zypper install libGLU1
then fix the fact that openSUSE has libffi.so.7 and ChimeraX is expecting libffi.so.6 with:
sudo ln -s /usr/lib64/libffi.so.7 /usr/libexec/UCSF-ChimeraX/lib/libffi.so.6
And after all that, I was able to run /usr/bin/chimerax. There were some warnings and errors in the terminal window, but I was able to open an mmCIF file from the PDB. So not a complete test, but a good start.
HTH,
Greg
On 10/18/2022 6:55 AM, Miguel via ChimeraX-users wrote:
Hello,
I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success.
Is it possible? If so, what would be the procedure?
Thanks, Miguel
I have not had any luck with VirtualBox, but I haven't tried it in a long time. VMware Workstation 16 Player works well enough for debugging. But you will loose performance by not running ChimeraX natively. And if you find a bug, we might not be able to fix it -- that is the bug fix will be to run ChimeraX natively. Your call. -- Greg On 10/19/2022 1:32 PM, Elaine Meng via ChimeraX-users wrote:
Hi Miguel,
I don't know if it is the same thing as virtual box, but use on a virtual machine is not supported. See "System Requirements": <https://www.rbvi.ucsf.edu/chimerax/system_requirements.html>
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 19, 2022, at 1:13 PM, Miguel via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Thank you for your answer. I will give it a try.
I have also tried to install ChimeraX on a VirtualBox machine with Ubuntu 22 a first time, and Windows the second time. It did not work. I guess ChimeraX cannot be installed in virtualbox machines. Could you confirm it?
Thanks once again,
Miguel
On 19/10/22 6:58, Greg Couch wrote:
ChimeraX 1.4 (and the 1.5 release candidate) needs Ubuntu 20 or newer. So the procedure for Ubuntu is to first update the operating system. Then install ChimeraX.
Unfortunately, we don't support openSUSE. But I was able to get the RHEL 8 rpm to appear to work on openSUSE 15.4. So, after downloading ucsf-chimerax-1.4-1.el8.x86_64.rpm:
sudo zypper install ~/Downloads/ucsf-chimerax-1.4-1.el8.x86_64.rpm
then skip the missing cario-gobject (since I installed Xfce instead of Gnome). Then it complains that the package header is not signed. Ignore that. Then, not all of the dependencies are there. Fix the missing libGLU.so with:
sudo zypper install libGLU1
then fix the fact that openSUSE has libffi.so.7 and ChimeraX is expecting libffi.so.6 with:
sudo ln -s /usr/lib64/libffi.so.7 /usr/libexec/UCSF-ChimeraX/lib/libffi.so.6
And after all that, I was able to run /usr/bin/chimerax. There were some warnings and errors in the terminal window, but I was able to open an mmCIF file from the PDB. So not a complete test, but a good start.
HTH,
Greg
On 10/18/2022 6:55 AM, Miguel via ChimeraX-users wrote:
Hello,
I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success.
Is it possible? If so, what would be the procedure?
Thanks, Miguel
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Elaine, Greg, Thank you very much for the amazing support. Best, Miguel On 19/10/22 23:49, Greg Couch wrote:
I have not had any luck with VirtualBox, but I haven't tried it in a long time. VMware Workstation 16 Player works well enough for debugging. But you will loose performance by not running ChimeraX natively. And if you find a bug, we might not be able to fix it -- that is the bug fix will be to run ChimeraX natively. Your call.
-- Greg
On 10/19/2022 1:32 PM, Elaine Meng via ChimeraX-users wrote:
Hi Miguel,
I don't know if it is the same thing as virtual box, but use on a virtual machine is not supported. See "System Requirements": <https://www.rbvi.ucsf.edu/chimerax/system_requirements.html>
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 19, 2022, at 1:13 PM, Miguel via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Thank you for your answer. I will give it a try.
I have also tried to install ChimeraX on a VirtualBox machine with Ubuntu 22 a first time, and Windows the second time. It did not work. I guess ChimeraX cannot be installed in virtualbox machines. Could you confirm it?
Thanks once again,
Miguel
On 19/10/22 6:58, Greg Couch wrote:
ChimeraX 1.4 (and the 1.5 release candidate) needs Ubuntu 20 or newer. So the procedure for Ubuntu is to first update the operating system. Then install ChimeraX.
Unfortunately, we don't support openSUSE. But I was able to get the RHEL 8 rpm to appear to work on openSUSE 15.4. So, after downloading ucsf-chimerax-1.4-1.el8.x86_64.rpm:
sudo zypper install ~/Downloads/ucsf-chimerax-1.4-1.el8.x86_64.rpm
then skip the missing cario-gobject (since I installed Xfce instead of Gnome). Then it complains that the package header is not signed. Ignore that. Then, not all of the dependencies are there. Fix the missing libGLU.so with:
sudo zypper install libGLU1
then fix the fact that openSUSE has libffi.so.7 and ChimeraX is expecting libffi.so.6 with:
sudo ln -s /usr/lib64/libffi.so.7 /usr/libexec/UCSF-ChimeraX/lib/libffi.so.6
And after all that, I was able to run /usr/bin/chimerax. There were some warnings and errors in the terminal window, but I was able to open an mmCIF file from the PDB. So not a complete test, but a good start.
HTH,
Greg
On 10/18/2022 6:55 AM, Miguel via ChimeraX-users wrote:
Hello,
I am trying to install ChimeraX on Ubuntu 16.04 or openSUSE Leap 15.2 without success.
Is it possible? If so, what would be the procedure?
Thanks, Miguel
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (3)
-
Elaine Meng -
Greg Couch -
Miguel