ChimeraX command for rmsd color range in angstrom
Dear Chimera community, does anyone know how to add a range of values for the rmsd colors in Chimera X? Something like this (below) in angstrom: => *color byattribute seq_rmsd #1 palette blue:white:red threshold 0:3;6* Thanks, Dario
Hi Dario, This is explained in the palette documentation -- see the third method with value,color pairs: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#palette-options> In your case, something like: color byattribute seq_rmsd #1 palette 0,blue:3,white:6,red I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 19, 2022, at 9:05 PM, Dario Passos via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera community, does anyone know how to add a range of values for the rmsd colors in Chimera X? Something like this (below) in angstrom:
=> color byattribute seq_rmsd #1 palette blue:white:red threshold 0:3;6
Thanks, Dario
Thank you, Elaine! Dario On Wed, Apr 20, 2022 at 8:04 AM Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Dario, This is explained in the palette documentation -- see the third method with value,color pairs:
< https://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#palette-options
In your case, something like:
color byattribute seq_rmsd #1 palette 0,blue:3,white:6,red
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 19, 2022, at 9:05 PM, Dario Passos via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera community, does anyone know how to add a range of values for the rmsd colors in Chimera X? Something like this (below) in angstrom:
=> color byattribute seq_rmsd #1 palette blue:white:red threshold 0:3;6
Thanks, Dario
participants (2)
-
Dario Passos -
Elaine Meng