Hi all, In the color command documentation, it says 'color random' can per atom or per residue. How can random residue colors be specified? I can only get random atom colors. Thanks! -da
Hi Daniel, The random color per residue is on the cartoon (ribbon), since cartoons can't be colored per atom. For example, commands: open 2gbp color random The atoms are colored randomly per atom. As far as I know, there isn't a way (other than probably some python script that is beyond my skill set) to make all the atoms of the residue match the random color assigned to the residue cartoon. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 30, 2024, at 11:31 AM, Daniel Asarnow via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi all, In the color command documentation, it says 'color random' can per atom or per residue. How can random residue colors be specified? I can only get random atom colors.
Thanks!
-da
Ah, thanks for the clarification! (Elaine was right about what I was trying to do). I wrote a python script that generates a .cxc file that randomly colors each residue one at a time. Best, -da On Fri, Aug 30, 2024 at 12:19 PM Elaine Meng <meng@cgl.ucsf.edu> wrote:
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Hi Daniel, The random color per residue is on the cartoon (ribbon), since cartoons can't be colored per atom. For example, commands:
open 2gbp color random
The atoms are colored randomly per atom. As far as I know, there isn't a way (other than probably some python script that is beyond my skill set) to make all the atoms of the residue match the random color assigned to the residue cartoon.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 30, 2024, at 11:31 AM, Daniel Asarnow via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Hi all, In the color command documentation, it says 'color random' can per atom or per residue. How can random residue colors be specified? I can only get random atom colors.
Thanks!
-da
Hi Daniel, color #1 random ribbon worked for me, as did color random Tom
On Aug 30, 2024, at 11:31 AM, Daniel Asarnow via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi all, In the color command documentation, it says 'color random' can per atom or per residue. How can random residue colors be specified? I can only get random atom colors.
Thanks!
-da _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (3)
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Daniel Asarnow -
Elaine Meng -
Tom Goddard