Hi Elaine, I tried the TOOLSHED LIST command, isolde and clipper are not on the list (chimeraX 1.16 and 1.4 version). If the website is down, would the toolshed command still work? Thanks, Yahui On Fri, May 19, 2023 at 4:46 PM Elaine Meng via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:

Hi Steffen, The Toolshed website is down, unfortunately, and I am not aware of any workaround to download plugins. Somebody is working on getting the Toolshed back up, but don't know how long that will take. Very sorry for the inconvenience, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

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On May 19, 2023, at 7:29 AM, Steffen Thomas via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:

Hi, at the moment i have an internal error using more tools ( https://cxtoolshed.rbvi.ucsf.edu/). Are more users with this problem here and is there a workaround to install ISOLDE? Many Thanks Steffen

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The Toolshed website is back up now. Elaine

On May 19, 2023, at 9:09 AM, Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hi Yahui, The functions that require contacting or showing the Toolshed website will give an error (e.g. "toolshed show" or "toolshed install <bundle-name>") so it will be obvious that they did not work.

The functions that just look at your own installation or locally cached information would work. For example, "toolshed list" lists what you already have installed, and it will work.

<https://rbvi.ucsf.edu/chimerax/docs/user/commands/toolshed.html>

Hopefully the Toolshed website will be back up soon anyway. Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

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On May 19, 2023, at 8:50 AM, Yahui Yan <yahuiuk@gmail.com> wrote:

Hi Elaine,

I tried the TOOLSHED LIST command, isolde and clipper are not on the list (chimeraX 1.16 and 1.4 version). If the website is down, would the toolshed command still work?

Thanks, Yahui

On Fri, May 19, 2023 at 4:46 PM Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote: Hi Steffen, The Toolshed website is down, unfortunately, and I am not aware of any workaround to download plugins. Somebody is working on getting the Toolshed back up, but don't know how long that will take. Very sorry for the inconvenience, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

...

On May 19, 2023, at 7:29 AM, Steffen Thomas via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hi, at the moment i have an internal error using more tools (https://cxtoolshed.rbvi.ucsf.edu/). Are more users with this problem here and is there a workaround to install ISOLDE? Many Thanks Steffen