Hi Aida, I think you want to use “measure center” https://www.cgl.ucsf.edu/chimerax/docs/user/commands/measure.html#center So something like “measure center :GBM” Cheers, Alexis On Wed, Sep 24, 2025 at 3:09 AM Marco Sette via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:

Hi Aida,

the pdb file reports the coordinates of the atoms.

Best

Marco Il 24/09/25 11:46, NUR AIDA SAKINAH via ChimeraX-users ha scritto:

Hi ChimeraX teams,

I want to search ligand center for docking analysis. What command do I need to use to retrieve the ligand center (x,y,z)? Example pdbid is 4yvv and the ligand is GBM. So i want the GBM's x,y,z coordinates.

Thank you.

Regards, Aida.

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-- Dr.Marco Sette, Ph.D. Department of Chemical Sciences and Technology University of Rome, "Tor Vergata"via della Ricerca Scientifica, 00133, Rome, Italy <https://www.google.com/maps/search/via+della+Ricerca+Scientifica,+00133,+Rom...> e-mail: sette@uniroma2.it e-mail: m77it@yahoo.it Tel.: +39-0672594424 Fax: +39-0672594328http://stc.uniroma2.it/?page_id=622&cn-entry-slug=marco-sette

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