Re: [chimerax-users] [Chimera-users] Making a movie from map series while keeping map's colors
Hi Michal, Since this is a ChimeraX question I'm putting it on chimerax-users@cgl.ucsf.edu -- otherwise the Chimera users will be confused! In the future you may want to use that address for ChimeraX questions. If I remember correctly, "vseries" re-renders the surfaces at the time of playback, unless you specify storing more of them with the "cacheFrames" option -- so try using "vseries" with "cacheFrames 20": <https://rbvi.ucsf.edu/chimerax/docs/user/commands/vseries.html> See previous answer to a similar question: <https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2022-February/003271.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 16, 2022, at 12:45 AM, Michal Arie Shmuelov via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Hi everyone, I have 20 maps (from 3D variability analysis) that I open as series in chimeraX. I’m coloring the map series using the command “color zone #X near #X distance X” (coloring the map according to pdb model). Next I’m trying to make a movie of this map series while retaining the map colors. For some reason when the morph/ vseries starts to run the colors disappear. Can someone help me to solve this problem? What are the commands that I should write? Thanks, Michal
Thanks for your help! It worked. Get Outlook for Android<https://aka.ms/ghei36> ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: Monday, May 16, 2022 7:05:07 PM To: Michal Arie Shmuelov <michal.arieshmuelov@weizmann.ac.il> Cc: chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu>; ChimeraX Users Help <chimerax-users@cgl.ucsf.edu> Subject: Re: [Chimera-users] Making a movie from map series while keeping map's colors Hi Michal, Since this is a ChimeraX question I'm putting it on chimerax-users@cgl.ucsf.edu -- otherwise the Chimera users will be confused! In the future you may want to use that address for ChimeraX questions. If I remember correctly, "vseries" re-renders the surfaces at the time of playback, unless you specify storing more of them with the "cacheFrames" option -- so try using "vseries" with "cacheFrames 20": <https://rbvi.ucsf.edu/chimerax/docs/user/commands/vseries.html> See previous answer to a similar question: <https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2022-February/003271.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 16, 2022, at 12:45 AM, Michal Arie Shmuelov via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Hi everyone, I have 20 maps (from 3D variability analysis) that I open as series in chimeraX. I’m coloring the map series using the command “color zone #X near #X distance X” (coloring the map according to pdb model). Next I’m trying to make a movie of this map series while retaining the map colors. For some reason when the morph/ vseries starts to run the colors disappear. Can someone help me to solve this problem? What are the commands that I should write? Thanks, Michal
participants (2)
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Elaine Meng -
Michal Arie Shmuelov