Feature question: "Worms" plots in "Render By Attribute"
Dear ChimeraX team, I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone. I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html Is this doable in the latest ChimeraX versions, however? Many thanks for any help you can provide, James -- *James Lingford* | Research Officer, Greening Lab Department of Microbiology, Monash Biomedicine Discovery Institute Monash University Google Scholar <https://scholar.google.com/citations?user=4KSRHTUAAAAJ&hl=en> | Website <https://www.jameslingford.com/>
No worms is not in ChimeraX. It has been on our list of things to do for a few years and I'd say it has a 50% chance of being in ChimeraX 1.8 which will be released about June 2024. Tom
On Jan 24, 2024, at 4:05 PM, James Lingford via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX team,
I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone.
I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html
Is this doable in the latest ChimeraX versions, however?
Many thanks for any help you can provide, James
-- James Lingford | Research Officer, Greening Lab Department of Microbiology, Monash Biomedicine Discovery Institute Monash University
Google Scholar <https://scholar.google.com/citations?user=4KSRHTUAAAAJ&hl=en> | Website <https://www.jameslingford.com/>_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
Here is the ChimeraX feature request ticket you can check in the future if you want to see if progress has been made implementing worms. https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/9942 Tom
On Jan 24, 2024, at 4:14 PM, Tom Goddard <goddard@sonic.net> wrote:
No worms is not in ChimeraX. It has been on our list of things to do for a few years and I'd say it has a 50% chance of being in ChimeraX 1.8 which will be released about June 2024.
Tom
On Jan 24, 2024, at 4:05 PM, James Lingford via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX team,
I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone.
I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html
Is this doable in the latest ChimeraX versions, however?
Many thanks for any help you can provide, James
-- James Lingford | Research Officer, Greening Lab Department of Microbiology, Monash Biomedicine Discovery Institute Monash University
Google Scholar <https://scholar.google.com/citations?user=4KSRHTUAAAAJ&hl=en> | Website <https://www.jameslingford.com/>_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (2)
-
James Lingford -
Tom Goddard