Feature question: "Worms" plots in "Render By Attribute"
Dear ChimeraX team,
I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone.
I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html
Is this doable in the latest ChimeraX versions, however?
Many thanks for any help you can provide, James
No worms is not in ChimeraX. It has been on our list of things to do for a few years and I'd say it has a 50% chance of being in ChimeraX 1.8 which will be released about June 2024.
Tom
On Jan 24, 2024, at 4:05 PM, James Lingford via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear ChimeraX team,
I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone.
I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html
Is this doable in the latest ChimeraX versions, however?
Many thanks for any help you can provide, James
-- James Lingford | Research Officer, Greening Lab Department of Microbiology, Monash Biomedicine Discovery Institute Monash University
Google Scholar https://scholar.google.com/citations?user=4KSRHTUAAAAJ&hl=en | Website https://www.jameslingford.com/_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
Here is the ChimeraX feature request ticket you can check in the future if you want to see if progress has been made implementing worms.
https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/9942
Tom
On Jan 24, 2024, at 4:14 PM, Tom Goddard goddard@sonic.net wrote:
No worms is not in ChimeraX. It has been on our list of things to do for a few years and I'd say it has a 50% chance of being in ChimeraX 1.8 which will be released about June 2024.
Tom
On Jan 24, 2024, at 4:05 PM, James Lingford via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear ChimeraX team,
I was wondering if ChimeraX v1.7+ has the function for rendering attributes by "Worms"? For example, rendering B-factors by the thickness of the backbone.
I noticed that it's possible in legacy version of Chimera, which I have since installed and generated worm plots with: https://www.cgl.ucsf.edu/chimera/ImageGallery/framedpecworm.html
Is this doable in the latest ChimeraX versions, however?
Many thanks for any help you can provide, James
-- James Lingford | Research Officer, Greening Lab Department of Microbiology, Monash Biomedicine Discovery Institute Monash University
Google Scholar https://scholar.google.com/citations?user=4KSRHTUAAAAJ&hl=en | Website https://www.jameslingford.com/_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (2)
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James Lingford
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Tom Goddard