Tiling images are stepped
Hi, I want to create an image of multiple volumes that are tiled horizontally. However, when I run the command "tile columns 6" the volumes get arranged in a step-like manner (attached image). I do not see this happen in chimera so I am wondering if this expected behaviour in ChimeraX? I am on UCSF ChimeraX version: 1.2.5 (2021-05-24) on the M1 MacBookPro, MacOS 11.6.
Best, Pranav -- Pranav Shah Postdoctoral Research Fellow.
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK
Hi Pranav, I could not reproduce this behavior. Are you sure you did not do a small Z-rotation after tiling? That might explain the appearance. I.e. first the models are laid out horizontally but then the whole view is rotated slightly clockwise. I can't distinguish that visually from a stepped layout since the rotation is small.
Try untiling (undo) and retiling and making sure not to rotate anything afterward. Or, if tiling does give a tilted row, although I can't reproduce it, maybe you could just Z-rotate the whole view slightly counterclockwise after tiling. Z-rotation is done with the same mousemode as XY rotation except with cursor in the periphery of the graphics window (the non-central area).
If you have an example for which you are willing to share data and where tiling definitely fails to lay out the row horizontally, you can use menu: Help... Report a Bug and attach the data needed to reproduce it, and include a short description.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
I tried Chimera 1.2.5 with 6 maps:
On Sep 30, 2021, at 5:21 AM, Pranav Shah via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hi, I want to create an image of multiple volumes that are tiled horizontally. However, when I run the command "tile columns 6" the volumes get arranged in a step-like manner (attached image). I do not see this happen in chimera so I am wondering if this expected behaviour in ChimeraX? I am on UCSF ChimeraX version: 1.2.5 (2021-05-24) on the M1 MacBookPro, MacOS 11.6.
Best, Pranav
Hi Pranav,
I have seen similar bad layout from the tile command. If I open 3 copies of a model the tile them it works, then rotate just one and try to tile several times and it gives all kinds of weird wrong positions.
open 1a0m ; open 1a0m ; open 1a0m tile turn y 140 model #1 tile tile
I've made a bug report for this and hope to fix it soon.
https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5320
Tom
On Sep 30, 2021, at 5:21 AM, Pranav Shah via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hi, I want to create an image of multiple volumes that are tiled horizontally. However, when I run the command "tile columns 6" the volumes get arranged in a step-like manner (attached image). I do not see this happen in chimera so I am wondering if this expected behaviour in ChimeraX? I am on UCSF ChimeraX version: 1.2.5 (2021-05-24) on the M1 MacBookPro, MacOS 11.6.
Best, Pranav -- Pranav Shah Postdoctoral Research Fellow.
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
As I understood it, if you wanted to change the orientations, the way to do it is to undo a previous tile so that everything is superimposed again, then change orientation, then use tile again.
I don't think repeatedly using "tile" from a previously tiled state was intended.
Elaine
On Sep 30, 2021, at 5:46 PM, Tom Goddard via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hi Pranav,
I have seen similar bad layout from the tile command. If I open 3 copies of a model the tile them it works, then rotate just one and try to tile several times and it gives all kinds of weird wrong positions.
open 1a0m ; open 1a0m ; open 1a0m tile turn y 140 model #1 tile tile
I've made a bug report for this and hope to fix it soon.
https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5320
Tom
On Sep 30, 2021, at 5:21 AM, Pranav Shah via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hi, I want to create an image of multiple volumes that are tiled horizontally. However, when I run the command "tile columns 6" the volumes get arranged in a step-like manner (attached image). I do not see this happen in chimera so I am wondering if this expected behaviour in ChimeraX? I am on UCSF ChimeraX version: 1.2.5 (2021-05-24) on the M1 MacBookPro, MacOS 11.6.
Best, Pranav -- Pranav Shah Postdoctoral Research Fellow.
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK <image.png>_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (3)
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Elaine Meng -
Pranav Shah -
Tom Goddard