ksdssp equivalent in Chimerax
Dear users,
I was wondering if there was a way to adjust the preset thresholds for betasheet and helix depictions in chimerax. Essentially, I am looking for a “ksdssp” command equivalent.
- “Ksdssp –s 2”
Best, Jabari
Hi Jabari, The command in ChimeraX is “dssp”:
http://rbvi.ucsf.edu/chimerax/docs/user/commands/dssp.html
You may already know this, but what is shown initially when you open PDB/mmCIF is usually from the contents of that structure file. Only if there is no secondary structure information in the file is “dssp” used automatically.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 6, 2020, at 4:16 PM, Elliott, Jabari jielliott@wustl.edu wrote:
Dear users, I was wondering if there was a way to adjust the preset thresholds for betasheet and helix depictions in chimerax. Essentially, I am looking for a “ksdssp” command equivalent.
“Ksdssp –s 2”
Best, Jabari
participants (2)
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Elaine Meng
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Elliott, Jabari