Proxy setting with user authentication
Dear ChimeraX developers, I’m a new user of ChimeraX. How can I set username/password for HTTP/HTTPS proxy settings? Our firewall is strict and requires username/password authentication. I’d like to install ISOLDE (we purchased the license), but I can’t install it via Tools > More Tools... I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde), and tried the command below in ChimeraX windows, toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl but failed during pip install (by SSLError, which means proxy was not set correctly). Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked. Best regards, Takaaki ----- Dr. Takaaki Fukami (mailto:fukamitka@chugai-pharm.co.jp) Protein Science Dept. (Protein Science 2 Gr.) Chugai Pharmaceutical Co.,Ltd. 200 Kajiwara, Kamakura, 247-8530 Japan Tel: +81-467-47-6178
Hi Takaaki, You inform ChimeraX about your proxy settings by using the ChimeraX Settings dialog (on Linux that would be under Favorites...→Settings) and going to the "Web Access" tab of that dialog. You will be able to fill in the proxy information there. Then click 'Save'. Let me know if you have any problems. --Eric Eric Pettersen UCSF Computer Graphics Lab
On May 17, 2021, at 4:18 AM, <fukamitka@chugai-pharm.co.jp> <fukamitka@chugai-pharm.co.jp> wrote:
Dear ChimeraX developers,
I’m a new user of ChimeraX. How can I set username/password for HTTP/HTTPS proxy settings? Our firewall is strict and requires username/password authentication.
I’d like to install ISOLDE (we purchased the license), but I can’t install it via Tools > More Tools... I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde <https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde>), and tried the command below in ChimeraX windows, toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl but failed during pip install (by SSLError, which means proxy was not set correctly). Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked.
Best regards,
Takaaki
----- Dr. Takaaki Fukami (mailto:fukamitka@chugai-pharm.co.jp <mailto:fukamitka@chugai-pharm.co.jp>) Protein Science Dept. (Protein Science 2 Gr.) Chugai Pharmaceutical Co.,Ltd. 200 Kajiwara, Kamakura, 247-8530 Japan Tel: +81-467-47-6178
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If your proxy does require a username and password, instead of just putting the host name in the "Host" field, you will have to put username:password@host. --Eric
On May 17, 2021, at 10:02 AM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:
Hi Takaaki, You inform ChimeraX about your proxy settings by using the ChimeraX Settings dialog (on Linux that would be under Favorites...→Settings) and going to the "Web Access" tab of that dialog. You will be able to fill in the proxy information there. Then click 'Save'. Let me know if you have any problems.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On May 17, 2021, at 4:18 AM, <fukamitka@chugai-pharm.co.jp <mailto:fukamitka@chugai-pharm.co.jp>> <fukamitka@chugai-pharm.co.jp <mailto:fukamitka@chugai-pharm.co.jp>> wrote:
Dear ChimeraX developers,
I’m a new user of ChimeraX. How can I set username/password for HTTP/HTTPS proxy settings? Our firewall is strict and requires username/password authentication.
I’d like to install ISOLDE (we purchased the license), but I can’t install it via Tools > More Tools... I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde <https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde>), and tried the command below in ChimeraX windows, toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl but failed during pip install (by SSLError, which means proxy was not set correctly). Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked.
Best regards,
Takaaki
----- Dr. Takaaki Fukami (mailto:fukamitka@chugai-pharm.co.jp <mailto:fukamitka@chugai-pharm.co.jp>) Protein Science Dept. (Protein Science 2 Gr.) Chugai Pharmaceutical Co.,Ltd. 200 Kajiwara, Kamakura, 247-8530 Japan Tel: +81-467-47-6178
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Dear Eric, Thank you for your help, though putting “username:password@host” in the “Host” fields didn’t work. Instead, I successfully installed the plugins (ISOLDE and its prerequisite Clipper) as below. - ChimeraX 1.2rc (1.2.4, May 14 version) was installed to CentOS7 using the provided rpm. - wheel files for the plugins (ISOLDE and its prerequisite Clipper) were downloaded from the ChimeraX Toolshed site. - pip install the plugins with the command below, executed as root (no need to set proxy at this time). /opt/UCSF/ChimeraX/bin/python3.8 -m pip install \ ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl \ ChimeraX_Clipper-0.16.0-cp38-cp38-manylinux_2_17_x86_64.whl By the way, can you provide an install package for RH7/8 which can be installed to a directory on NFS? Since we have Unlimited User ChimeraX license, I’d like to install/update the package once for all our PCs. Takaaki ----- Dr. Takaaki Fukami (mailto:fukamitka@chugai-pharm.co.jp) Protein Science Dept. (Protein Science 2 Gr.) Chugai Pharmaceutical Co.,Ltd. From: Eric Pettersen <pett@cgl.ucsf.edu> Sent: Tuesday, May 18, 2021 2:11 AM To: Fukami,Takaaki 深海隆明(タンパク質科学研究部2G) <fukamitka@chugai-pharm.co.jp> Cc: ChimeraX Users Help <chimerax-users@cgl.ucsf.edu> Subject: Re: [chimerax-users] Proxy setting with user authentication If your proxy does require a username and password, instead of just putting the host name in the "Host" field, you will have to put username:password@host. --Eric On May 17, 2021, at 10:02 AM, Eric Pettersen <pett@cgl.ucsf.edu<mailto:pett@cgl.ucsf.edu>> wrote: Hi Takaaki, You inform ChimeraX about your proxy settings by using the ChimeraX Settings dialog (on Linux that would be under Favorites...→Settings) and going to the "Web Access" tab of that dialog. You will be able to fill in the proxy information there. Then click 'Save'. Let me know if you have any problems. --Eric Eric Pettersen UCSF Computer Graphics Lab On May 17, 2021, at 4:18 AM, <fukamitka@chugai-pharm.co.jp<mailto:fukamitka@chugai-pharm.co.jp>> <fukamitka@chugai-pharm.co.jp<mailto:fukamitka@chugai-pharm.co.jp>> wrote: Dear ChimeraX developers, I’m a new user of ChimeraX. How can I set username/password for HTTP/HTTPS proxy settings? Our firewall is strict and requires username/password authentication. I’d like to install ISOLDE (we purchased the license), but I can’t install it via Tools > More Tools... I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde<https://jpn01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcxtoolshed.rbvi.ucsf.edu%2Fapps%2Fchimeraxisolde&data=04%7C01%7Cfukamitka%40chugai-pharm.co.jp%7C7ecb50ced4ea4f5b96d908d91956c44b%7Ca5bd0d07eca34fda98217c858c9deb8a%7C0%7C0%7C637568682793207475%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=NajP0LtRpviYl8Ix4DhKE%2BNPFQR1bmTs3cMDm3lUP4M%3D&reserved=0>), and tried the command below in ChimeraX windows, toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl but failed during pip install (by SSLError, which means proxy was not set correctly). Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked. Best regards, Takaaki ----- Dr. Takaaki Fukami (mailto:fukamitka@chugai-pharm.co.jp) Protein Science Dept. (Protein Science 2 Gr.) Chugai Pharmaceutical Co.,Ltd. 200 Kajiwara, Kamakura, 247-8530 Japan Tel: +81-467-47-6178 _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu<mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<https://jpn01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fplato.cgl.ucsf.edu%2Fmailman%2Flistinfo%2Fchimerax-users&data=04%7C01%7Cfukamitka%40chugai-pharm.co.jp%7C7ecb50ced4ea4f5b96d908d91956c44b%7Ca5bd0d07eca34fda98217c858c9deb8a%7C0%7C0%7C637568682793217474%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=LrJKVE7Tfl%2BO21SPede%2Frn%2Ft59fXKAe4FMsLVutJdjM%3D&reserved=0> _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu<mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Hello Takaaki, I've been thinking about doing this. I'll be creating a support ticket so you will know when it's done. -- Greg On 5/18/2021 5:12 PM, fukamitka@chugai-pharm.co.jp wrote:
By the way, can you provide an install package for RH7/8 which can be installed to a directory on NFS?
Takaaki
participants (3)
-
Eric Pettersen -
fukamitka＠chugai-pharm.co.jp -
Greg Couch