question about ChimeraX Hide Dust Feature
Hi I just downloaded the new ChimeraX, and was wondering where the Hide Dust option is located. I cannot find it. Any help is greatly appreciated! Philip _____________________________________ Philip Schmiege Graduate Student in Biophysics Li Lab, Dept. of Molecular Genetics, L5.162 philip.schmiege@utsouthwestern.edu ________________________________ UT Southwestern Medical Center The future of medicine, today.
Hi Philip, It’s command “surface dust”: <http://rbvi.ucsf.edu/chimerax/docs/user/commands/surface.html#sop> Sorry, we don’t yet have a ChimeraX documentation search to make it easier to find stuff like that. Google “chimerax hide dust” does find it, but it wouldn’t necessarily work as well for everything yoj’d like to find! I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 28, 2020, at 9:05 AM, Philip Schmiege <Philip.Schmiege@UTSouthwestern.edu> wrote:
Hi I just downloaded the new ChimeraX, and was wondering where the Hide Dust option is located. I cannot find it. Any help is greatly appreciated! Philip
Hi Elaine, Sorry but could you give me an example of what I would write in the command line? I am having trouble getting it to work. Just checking there’s now tool for it like there was in the older version of chimera right? Thanks! Philip Sent from my iPhone
On Jan 28, 2020, at 14:53, Elaine Meng <meng@cgl.ucsf.edu> wrote:
EXTERNAL MAIL
Hi Philip, It’s command “surface dust”:
<http://rbvi.ucsf.edu/chimerax/docs/user/commands/surface.html#sop>
Sorry, we don’t yet have a ChimeraX documentation search to make it easier to find stuff like that. Google “chimerax hide dust” does find it, but it wouldn’t necessarily work as well for everything yoj’d like to find!
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 28, 2020, at 9:05 AM, Philip Schmiege <Philip.Schmiege@UTSouthwestern.edu> wrote:
Hi I just downloaded the new ChimeraX, and was wondering where the Hide Dust option is located. I cannot find it. Any help is greatly appreciated! Philip
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________________________________ UT Southwestern Medical Center The future of medicine, today.
Hi Philip, There is no GUI (tool dialog) yet. There are options so you should check the details in the manual page for what you really want, but here are some simple examples: open 9333 fromDatabase emdb surface dust #1 surf undust #1 surf dust #1 size 2 metric “size rank" … if your map is open as model #1. Do not cut and paste the example with quotation marks because the mail app may have changed them to fancy quotation marks. Instead type plain quotation marks from your keyboard (single or double doesn’t matter). <http://rbvi.ucsf.edu/chimerax/docs/user/commands/surface.html#sop> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 29, 2020, at 2:21 PM, Philip Schmiege <Philip.Schmiege@UTSouthwestern.edu> wrote:
Hi Elaine,
Sorry but could you give me an example of what I would write in the command line? I am having trouble getting it to work.
Just checking there’s now tool for it like there was in the older version of chimera right?
Thanks! Philip
Sent from my iPhone
On Jan 28, 2020, at 14:53, Elaine Meng <meng@cgl.ucsf.edu> wrote:
EXTERNAL MAIL
Hi Philip, It’s command “surface dust”:
<http://rbvi.ucsf.edu/chimerax/docs/user/commands/surface.html#sop>
Sorry, we don’t yet have a ChimeraX documentation search to make it easier to find stuff like that. Google “chimerax hide dust” does find it, but it wouldn’t necessarily work as well for everything yoj’d like to find!
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 28, 2020, at 9:05 AM, Philip Schmiege <Philip.Schmiege@UTSouthwestern.edu> wrote:
Hi I just downloaded the new ChimeraX, and was wondering where the Hide Dust option is located. I cannot find it. Any help is greatly appreciated! Philip
participants (2)
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Elaine Meng -
Philip Schmiege