Hi Tony, If you let your computer sleep when the ChimeraX AlphaFold job is run on Google Colab it will probably lose the results. Google intends Colab to be for interactive use. So I suggest setting your computer not to sleep when running a prediction. There is more discussion of AlphaFold prediction not downloading on the ChimeraX mailing list https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/... including how you can get the results if Google Colab has not closed the session and deleted them (happens within a few hours). Tom

On Feb 6, 2024, at 5:57 AM, Anthony Newcombe via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hello ChimeraX team

I am evaluating ChimeraX (non-commercial use) but have an issue you may be able to help with. When I run a structure prediction:

Tools > structure prediction > AlphaFold

I enter two primary sequences and hit ‘predict’

The simulation completes, but nothing opens in ChimeraX, also there is no data saved in the location below. I have tried alternative locations, but no data is saved

~/Downloads/ChimeraX/AlphaFold/prediction_[N]

Do you know how I obtain saved predicted results ChimeraX? Do I need a paid service for this?

Many thanks

Tony

Anthony Newcombe Brook Lodge Lisnacunna Ballinascarthy Clonakilty Cork _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/