Re: [chimerax-users] Model panel for multi-state objects of dimeric protein

Hi Enrico, I haven't figured out why this doesn't work on your example (omitted since mailing to the list): close #1 & ~ #1.5 However, this works: delete #1 & ~ #1.5 Also if you didn't have other models (#2 etc.) that you were trying to keep you could just use delete ~#1.5 I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 1, 2022, at 6:39 AM, Enrico Martinez <jmsstarlight@gmail.com> wrote:
Hello Elaine, I just faced the same problem that has been indicated in this topic Thi time I am dealing with the monomeric multi-model complex obtained from docking. Here is the example of a pdb file consisted of 80+ docking poses. To keep only the 1.5 sub-modeli've tried to use close #1 & ~ #1.5 but this produced nothing, while for other pdbs it works fine. Could you tell me what's wrong with it? Many thanks in advance Cheers Enrico

Thank you very much, Elaine! This works well for this and other pdbs (just tested on 3 different docking ensembles). Probably there is some bug related to the missed residues in the pdb (which were recognized as sub-models in each sub model :-) ). I also could not understand completely why it was like this.. Cheers, Enrico Il giorno lun 1 ago 2022 alle ore 18:35 Elaine Meng <meng@cgl.ucsf.edu> ha scritto:
Hi Enrico, I haven't figured out why this doesn't work on your example (omitted since mailing to the list):
close #1 & ~ #1.5
However, this works:
delete #1 & ~ #1.5
Also if you didn't have other models (#2 etc.) that you were trying to keep you could just use
delete ~#1.5
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 1, 2022, at 6:39 AM, Enrico Martinez <jmsstarlight@gmail.com> wrote:
Hello Elaine, I just faced the same problem that has been indicated in this topic Thi time I am dealing with the monomeric multi-model complex obtained from docking. Here is the example of a pdb file consisted of 80+ docking poses. To keep only the 1.5 sub-modeli've tried to use close #1 & ~ #1.5 but this produced nothing, while for other pdbs it works fine. Could you tell me what's wrong with it? Many thanks in advance Cheers Enrico
participants (2)
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Elaine Meng
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Enrico Martinez