Hi Andrea,

I don't think it is possible to combine the effects of the "surface zone" and "surface dust" commands. Both of them set which part of the surface is hidden without considering what part is already hidden. Each of those commands has an "update" option (default true) which causes the displayed part to update if the surface shape changes. Only one command can update the surface masking so the last command you run will do the updating. But controlling this update option also does not help because both commands set the parts of the surface to show and hide without regard to what was previously shown or hidden.

Tom

On Nov 27, 2023, at 8:22 AM, Guillaume Gaullier via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:

Hi,

Try using the surface dust command before surface zone, this should do what you want in this order.

I hope this helps,

Guillaume

...

On Nov 27, 2023, at 16:43, Andrea Smith via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:

 Hi,

I have cartoon and map visible for a part of my molecule (one protomer from a tetramer).

When I click on hide dust, the dust is hidden but at the same time the map appears for the rest of the tetramer.

Is there a way to hide dust around the visible part of the map while keeping a part of the map hidden?

Thanks, Andrea

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Hi,

surface zone #2 near #1/A,B,C,Z distance 5 maxComponents 2

worked for what I wanted to achieve in my model.

Thank you, Andrea

On Monday, November 27, 2023 23:00 CET, Tom Goddard goddard@sonic.net wrote:   Maybe the "surface zone" option maxComponents will help if you just want to show the largest surface patch. surface zone #2 near #1 distance 5 maxComponents 1 I just noticed that using maxComponents and then changing the surface shape (e.g. threshold level change) shows the whole surface again instead of just updating the zone for the new surface.  I fixed that in the daily build and 1.7 (November 28 builds).   Tom  On Nov 27, 2023, at 1:42 PM, Tom Goddard via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote: Hi Andrea,   I don't think it is possible to combine the effects of the "surface zone" and "surface dust" commands.  Both of them set which part of the surface is hidden without considering what part is already hidden.  Each of those commands has an "update" option (default true) which causes the displayed part to update if the surface shape changes.  Only one command can update the surface masking so the last command you run will do the updating.  But controlling this update option also does not help because both commands set the parts of the surface to show and hide without regard to what was previously shown or hidden. Tom  On Nov 27, 2023, at 8:22 AM, Guillaume Gaullier via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote: Hi, Try using the surface dust command before surface zone, this should do what you want in this order. I hope this helps, Guillaume On Nov 27, 2023, at 16:43, Andrea Smith via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:   Hi,

I have cartoon and map visible for a part of my molecule (one protomer from a tetramer).

When I click on hide dust, the dust is hidden but at the same time the map appears for the rest of the tetramer.

Is there a way to hide dust around the visible part of the map while keeping a part of the map hidden?

Thanks, Andrea  VARNING: Klicka inte på länkar och öppna inte bilagor om du inte känner igen avsändaren och vet att innehållet är säkert. CAUTION: Do not click on links or open attachments unless you recognise the sender and know the content is safe. _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/

När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/

E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy_________________________... ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/... ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/