error when using Blast Protein
Dear ChimeraX forum, I am trying to do a sequence search with the Blast Protein tool (MacOS). I have tried using various pdb structures/chains but am repeatedly getting the following error: "ValueError: not enough values to unpack (expected 2, got 1)" from ".../blastprotein/pdbinfo.py", line 206, in fetch_info entry, auth_cid = pcid.split('_') What is the correct usage of Blast Protein? Thank you! Nadia
Hi Nadia, This problem has been fixed in the daily build for a week or two. Please use that. Sorry for the inconvenience. --Eric Eric Pettersen UCSF Computer Graphics Lab
On Feb 5, 2021, at 5:22 AM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt@campus.tu-berlin.de> wrote:
Dear ChimeraX forum,
I am trying to do a sequence search with the Blast Protein tool (MacOS). I have tried using various pdb structures/chains but am repeatedly getting the following error:
"ValueError: not enough values to unpack (expected 2, got 1)" from ".../blastprotein/pdbinfo.py", line 206, in fetch_info entry, auth_cid = pcid.split('_')
What is the correct usage of Blast Protein? Thank you! Nadia _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
Thank you very much! Working fine now. You guys are awesome!!! Thank you for the great software. ----------------------------------------------- Dr. Nadia Elghobashi-Meinhardt Biomolecular Modeling Institute of Chemistry Technical University Berlin Straße 17. Juni 135 10623 Berlin ________________________________ From: Eric Pettersen <pett@cgl.ucsf.edu> Sent: Friday, February 5, 2021 5:11:46 PM To: Elghobashi-Meinhardt, Nadia Cc: chimerax-users@cgl.ucsf.edu Subject: Re: [chimerax-users] error when using Blast Protein Hi Nadia, This problem has been fixed in the daily build for a week or two. Please use that. Sorry for the inconvenience. --Eric Eric Pettersen UCSF Computer Graphics Lab On Feb 5, 2021, at 5:22 AM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt@campus.tu-berlin.de<mailto:n.elghobashi-meinhardt@campus.tu-berlin.de>> wrote: Dear ChimeraX forum, I am trying to do a sequence search with the Blast Protein tool (MacOS). I have tried using various pdb structures/chains but am repeatedly getting the following error: "ValueError: not enough values to unpack (expected 2, got 1)" from ".../blastprotein/pdbinfo.py", line 206, in fetch_info entry, auth_cid = pcid.split('_') What is the correct usage of Blast Protein? Thank you! Nadia _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu<mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
You're welcome! Happy I could help. --Eric
On Feb 5, 2021, at 2:08 PM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt@campus.tu-berlin.de> wrote:
Thank you very much! Working fine now. You guys are awesome!!! Thank you for the great software.
----------------------------------------------- Dr. Nadia Elghobashi-Meinhardt
Biomolecular Modeling Institute of Chemistry Technical University Berlin Straße 17. Juni 135 10623 Berlin From: Eric Pettersen <pett@cgl.ucsf.edu> Sent: Friday, February 5, 2021 5:11:46 PM To: Elghobashi-Meinhardt, Nadia Cc: chimerax-users@cgl.ucsf.edu Subject: Re: [chimerax-users] error when using Blast Protein
Hi Nadia, This problem has been fixed in the daily build for a week or two. Please use that. Sorry for the inconvenience.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Feb 5, 2021, at 5:22 AM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt@campus.tu-berlin.de <mailto:n.elghobashi-meinhardt@campus.tu-berlin.de>> wrote:
Dear ChimeraX forum,
I am trying to do a sequence search with the Blast Protein tool (MacOS). I have tried using various pdb structures/chains but am repeatedly getting the following error:
"ValueError: not enough values to unpack (expected 2, got 1)" from ".../blastprotein/pdbinfo.py", line 206, in fetch_info entry, auth_cid = pcid.split('_')
What is the correct usage of Blast Protein? Thank you! Nadia _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
participants (2)
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Elghobashi-Meinhardt, Nadia -
Eric Pettersen