Hi Steve, There is no per-model clipping yet in ChimeraX. This is listed in the "missing features" section of the download page. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

On Jul 5, 2020, at 3:05 AM, Steve Chou <stevezchou@gmail.com> wrote:

Hi ChimeraX developers and users, When a ligand is embedded in the protein, can I only clip the surface of the protein, but not the ligand (sticks)? Many thanks, Steve