Hi All, is it possible to import residue attributes from a text/csv file? For instance, I have some data calculated at an external server, and the output is per residue in CSV format. I would like to view it as color-coded molecule, using the command "render by attribute". Is it possible? Or if not, do you know some workaround? Also, I have these data in a pymol file but I don't use pymol. Is there any way how to read a pymol (CSE) file into chimeraX? Best Sasha ________________________ Alexandra Zahradnikova Institute of Experimental Endocrinology Biomedical Research Center Slovak Academy of Sciences Bratislava Slovakia
Hi Sasha, Yes, this is commonly done by people who want to define custom attribute values. We have a simple text format for reading attributes into ChimeraX. See "attribute assignment files" for the format description: <https://rbvi.ucsf.edu/chimerax/docs/user/formats/defattr.html> You can open them as "format defattr" or filename *.defattr with the "open" command, which will automatically assign the attributes as defined in the file. Sorry, ChimeraX doesn't read Pymol CSE files. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Mar 2, 2026, at 12:25 AM, Alexandra Zahradnikova via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi All, is it possible to import residue attributes from a text/csv file? For instance, I have some data calculated at an external server, and the output is per residue in CSV format. I would like to view it as color-coded molecule, using the command "render by attribute". Is it possible? Or if not, do you know some workaround?
Also, I have these data in a pymol file but I don't use pymol. Is there any way how to read a pymol (CSE) file into chimeraX?
Best Sasha
participants (2)
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Alexandra Zahradnikova -
Elaine Meng