how to save .pdb file of predicted fusion protein generated by chimerax and alphafold
Hi, I tried using chimeraX and alphafold to predict my fusion protein. The result seems promising and generated a .pdb file. I would like to enquire how to save the .pdb file. I would like to open the .pdb file using pymol. Thank you. Kind Regards, Ruby Pelingon
Hi Ruby, You can use either the ChimeraX menu: File... Save (choose Files of type: PDB in the dialog, browse to the the intended save location, etc.) or the "save" command: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/save.html#pdb> To see the User Guide, use menu: Help... User Guide. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 15, 2021, at 5:18 AM, Ruby Pelingon via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi, I tried using chimeraX and alphafold to predict my fusion protein. The result seems promising and generated a .pdb file. I would like to enquire how to save the .pdb file. I would like to open the .pdb file using pymol. Thank you. Kind Regards, Ruby Pelingon
Hi Elaine, Thank you very much. I actually figured it out as soon after I sent the enquiry email. :)) Sorry about that. Thank you again for your reply. Kind Regards, Ruby Pelingon
On 16 Sep 2021, at 1:30 am, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Ruby, You can use either the ChimeraX menu: File... Save (choose Files of type: PDB in the dialog, browse to the the intended save location, etc.) or the "save" command: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/save.html#pdb>
To see the User Guide, use menu: Help... User Guide. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 15, 2021, at 5:18 AM, Ruby Pelingon via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi, I tried using chimeraX and alphafold to predict my fusion protein. The result seems promising and generated a .pdb file. I would like to enquire how to save the .pdb file. I would like to open the .pdb file using pymol. Thank you. Kind Regards, Ruby Pelingon
participants (2)
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Elaine Meng -
Ruby Pelingon