Re: [chimerax-users] recent query
Dear Eric,
thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.
i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.
i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.
is there a way to include scikit learn , pandas libraries in chimerax script?
thanks once again for all your support !
best amith
Hi Amith, You can install packages into ChimeraX with its “pip” command, e.g. “pip install pandas”.
—Eric
On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith Amith.Rangarajan@ucsf.edu wrote:
This Message Is From an External Sender This message came from outside your organization. Dear Eric,
thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.
i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.
i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.
is there a way to include scikit learn , pandas libraries in chimerax script?
thanks once again for all your support !
best amith
Dear Eric,
that is super cool !
i typed pip install pandas into the command line and it got installed [cid:68637c02-25ad-4a0d-833b-d987c7ae690b] replying with a suitable subject line for reference.
thanks amith ________________________________ From: Eric Pettersen pett@cgl.ucsf.edu Sent: Thursday, January 26, 2023 10:44 AM To: Rangarajan, Amith Amith.Rangarajan@ucsf.edu Cc: ChimeraX Users Help ChimeraX-users@cgl.ucsf.edu Subject: Re: recent query
Hi Amith, You can install packages into ChimeraX with its “pip” command, e. g. “pip install pandas”. —Eric On Jan 26, 2023, at 10: 03 AM, Rangarajan, Amith <Amith. Rangarajan@ ucsf. edu> wrote: ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization.
ZjQcmQRYFpfptBannerEnd Hi Amith, You can install packages into ChimeraX with its “pip” command, e.g. “pip install pandas”.
—Eric
On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith <Amith.Rangarajan@ucsf.edumailto:Amith.Rangarajan@ucsf.edu> wrote:
This Message Is From an External Sender This message came from outside your organization. Dear Eric,
thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.
i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.
i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.
is there a way to include scikit learn , pandas libraries in chimerax script?
thanks once again for all your support !
best amith
Happy to help. Glad it worked. :-)
—Eric
On Jan 26, 2023, at 11:00 AM, Rangarajan, Amith via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
This Message Is From an External Sender This message came from outside your organization. Dear Eric,
that is super cool !
i typed pip install pandas into the command line and it got installed <image.png> replying with a suitable subject line for reference.
thanks amith From: Eric Pettersen <pett@cgl.ucsf.edu mailto:pett@cgl.ucsf.edu> Sent: Thursday, January 26, 2023 10:44 AM To: Rangarajan, Amith <Amith.Rangarajan@ucsf.edu mailto:Amith.Rangarajan@ucsf.edu> Cc: ChimeraX Users Help <ChimeraX-users@cgl.ucsf.edu mailto:ChimeraX-users@cgl.ucsf.edu> Subject: Re: recent query
This Message Is From an External Sender This message came from outside your organization. Hi Amith, You can install packages into ChimeraX with its “pip” command, e.g. “pip install pandas”.
—Eric
On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith <Amith.Rangarajan@ucsf.edu mailto:Amith.Rangarajan@ucsf.edu> wrote:
This Message Is From an External Sender This message came from outside your organization. Dear Eric,
thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.
i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.
i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.
is there a way to include scikit learn , pandas libraries in chimerax script?
thanks once again for all your support !
best amith
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participants (2)
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Eric Pettersen -
Rangarajan, Amith