Thanks! I'll try the workaround you suggest Antón On 7/1/22 18:51, Elaine Meng wrote:

On Jan 7, 2022, at 9:15 AM, Antón Vila-Sanjurjo <anton.vila@udc.es> wrote:

...

Hi Elaine, everytime I try the swapnaa command in ChimeraX I get an error because the command is not recognized. Has swapna being implemented in ChimeraX? best, Antón

Hi Antón, ChimeraX does not have a "swapna" command currently, although it does have "swapaa". You can see the list of commands using menu: Help... User Guide.

There is also a copy of the ChimeraX User Guide at our website, but it may be newer than the version of the program that you have downloaded:

<https://rbvi.ucsf.edu/chimerax/docs/user/index.html>

In the meanwhile, you can use Chimera for "swapna" and save a PDB file, then read it into ChimeraX if you want.

I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

-- Antón Vila-Sanjurjo, PhD Profesor del Area de Genética Departamento de Bioloxía Facultade de Ciencias Universidade da Coruña (UDC) Campus Zapateira, s/n 15.071 - A Coruña - España (Spain). tlf: (34) 981-167000 ext:2267 e-mail: anton.vila@udc.es