(disclaimer: you should probably follow Elaine’s much more extensive advice) “atomspec” just refers to any selection string - e.g. “#1/A:50”, “:LIG”, “sel” etc. On Fri, 19 Jan 2024 at 18:52, Cameron Larson <cllarson@ucdavis.edu> wrote:
Thank you for your help. A silly question, but what is might 'atomspec' be? a range of atoms?
Thank you, Tristan
On Fri, Jan 19, 2024 at 11:51 AM Tristan Croll <tcroll@altoslabs.com> wrote:
Try "setattr {atomspec} bonds radius {value in Angstroms}".
Best, Tristan
On Fri, Jan 19, 2024 at 4:28 PM Cameron Larson via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Hello,
I am using chimeraX to visualize a ligand. I am familiar with the commands to increase protein thickness ('cartoon style protein thickness') but how can I do this for a ligand or other molecule?
Really appreciate the help,
-Cameron Larson _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
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-- Altos Labs UK Limited | England | Company reg 13484917 Registered address: 3rd Floor 1 Ashley Road, Altrincham, Cheshire, United Kingdom, WA14 2DT
Hi Cameron, If you look at any of the command help pages in the User Guide, many of them have "atom-spec" in the usage, which in turn links to this page describing the many possibilities: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html> User Guide list of commands with links to help for each one: <https://rbvi.ucsf.edu/chimerax/docs/user/index.html#commands> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 19, 2024, at 10:55 AM, Tristan Croll via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
(disclaimer: you should probably follow Elaine’s much more extensive advice)
“atomspec” just refers to any selection string - e.g. “#1/A:50”, “:LIG”, “sel” etc.
On Fri, 19 Jan 2024 at 18:52, Cameron Larson <cllarson@ucdavis.edu> wrote: Thank you for your help. A silly question, but what is might 'atomspec' be? a range of atoms?
Thank you, Tristan
On Fri, Jan 19, 2024 at 11:51 AM Tristan Croll <tcroll@altoslabs.com> wrote: Try "setattr {atomspec} bonds radius {value in Angstroms}".
Best, Tristan
On Fri, Jan 19, 2024 at 4:28 PM Cameron Larson via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote: Hello,
I am using chimeraX to visualize a ligand. I am familiar with the commands to increase protein thickness ('cartoon style protein thickness') but how can I do this for a ligand or other molecule?
Really appreciate the help,
-Cameron Larson _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
Altos Labs UK Limited | England | Company reg 13484917 Registered address: 3rd Floor 1 Ashley Road, Altrincham, Cheshire, United Kingdom, WA14 2DT
Altos Labs UK Limited | England | Company reg 13484917 Registered address: 3rd Floor 1 Ashley Road, Altrincham, Cheshire, United Kingdom, WA14 2DT _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
participants (2)
-
Elaine Meng -
Tristan Croll