labeling of protein-ligand interactions
Dear ChimeraX users!
I am working on the visualization of the protein-ligand interactions. The two below commands are used to visualize and label amino acids involved in the interactions with the ligand contacts #1.1 & ligand makePseudobonds false reveal true log true label @@display
How could I increase the font size and change the colour of the displayed amino acid labels (like Tyr-188)? Is it possible to hide the name of the ligand which always appears after the label command? Many thanks in advance! Enrico
See the "label" documentation, e.g. use command "help label" or see the copy on our website here:
https://rbvi.ucsf.edu/chimerax/docs/user/commands/label.html
Probably you want to try the "color" "height" and "attribute" options of that command.
Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 17, 2022, at 9:25 AM, Enrico Martinez via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear ChimeraX users!
I am working on the visualization of the protein-ligand interactions. The two below commands are used to visualize and label amino acids involved in the interactions with the ligand contacts #1.1 & ligand makePseudobonds false reveal true log true label @@display
How could I increase the font size and change the colour of the displayed amino acid labels (like Tyr-188)? Is it possible to hide the name of the ligand which always appears after the label command? Many thanks in advance! Enrico
Also, if you meant that you don't want any label on the ligand, then don't include it in the label command. E.g. instead of
label @@display
...you could limit to protein only:
label @@display & protein
Use of "&" and other combination symbols is explained here: https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#combinations
I hope this helps, Elaine
On Jan 17, 2022, at 11:40 AM, Elaine Meng via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
See the "label" documentation, e.g. use command "help label" or see the copy on our website here:
https://rbvi.ucsf.edu/chimerax/docs/user/commands/label.html
Probably you want to try the "color" "height" and "attribute" options of that command.
Elaine
Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 17, 2022, at 9:25 AM, Enrico Martinez via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear ChimeraX users!
I am working on the visualization of the protein-ligand interactions. The two below commands are used to visualize and label amino acids involved in the interactions with the ligand contacts #1.1 & ligand makePseudobonds false reveal true log true label @@display
How could I increase the font size and change the colour of the displayed amino acid labels (like Tyr-188)? Is it possible to hide the name of the ligand which always appears after the label command? Many thanks in advance! Enrico
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Thank you very much Elaine! Cheers, Enrico
пн, 17 янв. 2022 г. в 20:48, Elaine Meng meng@cgl.ucsf.edu:
Also, if you meant that you don't want any label on the ligand, then don't include it in the label command. E.g. instead of
label @@display
...you could limit to protein only:
label @@display & protein
Use of "&" and other combination symbols is explained here: https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#combinations
I hope this helps, Elaine
On Jan 17, 2022, at 11:40 AM, Elaine Meng via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
See the "label" documentation, e.g. use command "help label" or see the copy on our website here:
https://rbvi.ucsf.edu/chimerax/docs/user/commands/label.html
Probably you want to try the "color" "height" and "attribute" options of that command.
Elaine
Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 17, 2022, at 9:25 AM, Enrico Martinez via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Dear ChimeraX users!
I am working on the visualization of the protein-ligand interactions. The two below commands are used to visualize and label amino acids involved in the interactions with the ligand contacts #1.1 & ligand makePseudobonds false reveal true log true label @@display
How could I increase the font size and change the colour of the displayed amino acid labels (like Tyr-188)? Is it possible to hide the name of the ligand which always appears after the label command? Many thanks in advance! Enrico
ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (2)
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Elaine Meng
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Enrico Martinez