Add Chain to AtomicStructure
Hi, is there a way to add a Chain object to an AtomicStructure? Regards, Daniel Palma Igor
Hi Daniel, A Chain should "create itself" as the appropriate inter-residue polymeric bonds are formed. --Eric Eric Pettersen UCSF Computer Graphics Lab
On Dec 2, 2020, at 7:22 AM, Daniel Esteban Palma Igor <daniel.palma.i@ug.uchile.cl> wrote:
Hi, is there a way to add a Chain object to an AtomicStructure? Regards, Daniel Palma Igor _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Ahh ok. After reading some comments in the code and doing some testing, at least in proteins, the chain expands whenever a bond is created between C and N atoms of different residues, and when a "missing structure" pseudobond is created between CA atoms, is that correct? On Wed, 2 Dec 2020 at 14:37, Eric Pettersen <pett@cgl.ucsf.edu> wrote:
Hi Daniel, A Chain should "create itself" as the appropriate inter-residue polymeric bonds are formed.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Dec 2, 2020, at 7:22 AM, Daniel Esteban Palma Igor < daniel.palma.i@ug.uchile.cl> wrote:
Hi, is there a way to add a Chain object to an AtomicStructure? Regards, Daniel Palma Igor _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Yes. To elaborate a little, it's missing-structure pseudobonds between the last backbone atom of one polymeric residue and the first backbone atom of another. Also, there are analogous criteria for nucleic-acid bonds / missing-structure pseudobonds. --Eric
On Dec 2, 2020, at 11:39 AM, Daniel Esteban Palma Igor <daniel.palma.i@ug.uchile.cl> wrote:
Ahh ok. After reading some comments in the code and doing some testing, at least in proteins, the chain expands whenever a bond is created between C and N atoms of different residues, and when a "missing structure" pseudobond is created between CA atoms, is that correct?
On Wed, 2 Dec 2020 at 14:37, Eric Pettersen <pett@cgl.ucsf.edu <mailto:pett@cgl.ucsf.edu>> wrote: Hi Daniel, A Chain should "create itself" as the appropriate inter-residue polymeric bonds are formed.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Dec 2, 2020, at 7:22 AM, Daniel Esteban Palma Igor <daniel.palma.i@ug.uchile.cl <mailto:daniel.palma.i@ug.uchile.cl>> wrote:
Hi, is there a way to add a Chain object to an AtomicStructure? Regards, Daniel Palma Igor _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (2)
-
Daniel Esteban Palma Igor -
Eric Pettersen