leave On Sat, 1 Jul 2023 at 10:45, <chimerax-users-request@cgl.ucsf.edu> wrote:

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Today's Topics:

1. Re: Volume Series tool missing (Elaine Meng) 2. Re: Volume Series tool missing (Jarrett Bowman) 3. ChimeraX Questions (Bani Kaur)

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Message: 1 Date: Fri, 30 Jun 2023 13:14:56 -0700 From: Elaine Meng <meng@cgl.ucsf.edu> Subject: [chimerax-users] Re: Volume Series tool missing To: Jarrett Bowman <jarrettbow@gmail.com> Cc: chimerax-users@cgl.ucsf.edu Message-ID: <D9C12F1F-8A96-428D-B572-4D0E83ACD5EA@cgl.ucsf.edu> Content-Type: text/plain; charset=us-ascii

Hi Jerry, The picture shows that the video tutorial you are viewing is for Chimera, not ChimeraX. Chimera and ChimeraX are two different programs.

ChimeraX does not have a GUI tool, as you said, but it does have volume series capabilities via the "vseries" command, see both of the following and links therein:

<https://rbvi.ucsf.edu/chimerax/docs/user/trajectories.html> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/vseries.html>

Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

...

On Jun 30, 2023, at 12:46 PM, Jarrett Bowman via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:

Hello, I am trying to use the volume series tool on ChimeraX version 1.6.1 for Windows. It doesn't appear to be in my download of ChimeraX possibly along with other tools. A tutorial I am following shows this picture:

<image.png>

While this is what I have:

<image.png>

Any help would be greatly appreciated!

Jerry Bowman

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Message: 2 Date: Fri, 30 Jun 2023 14:49:14 -0600 From: Jarrett Bowman <jarrettbow@gmail.com> Subject: [chimerax-users] Re: Volume Series tool missing To: ChimeraX Users Help <chimerax-users@cgl.ucsf.edu> Message-ID: <CAFN=EO2pGxSNMRJ=ChH+QTG+WSH-G8oshP41fJtKbTBD= DF_aw@mail.gmail.com> Content-Type: multipart/alternative; boundary="000000000000d3119b05ff5ef3b8"

Elaine,

Thanks! The links helped a bunch

On Fri, Jun 30, 2023 at 2:15 PM Elaine Meng <meng@cgl.ucsf.edu> wrote:

...

Hi Jerry, The picture shows that the video tutorial you are viewing is for Chimera, not ChimeraX. Chimera and ChimeraX are two different programs.

ChimeraX does not have a GUI tool, as you said, but it does have volume series capabilities via the "vseries" command, see both of the following and links therein:

<https://rbvi.ucsf.edu/chimerax/docs/user/trajectories.html> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/vseries.html>

Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

...

On Jun 30, 2023, at 12:46 PM, Jarrett Bowman via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:

Hello, I am trying to use the volume series tool on ChimeraX version 1.6.1 for Windows. It doesn't appear to be in my download of ChimeraX possibly along with other tools. A tutorial I am following shows this picture:

<image.png>

While this is what I have:

<image.png>

Any help would be greatly appreciated!

Jerry Bowman