Hello, I am new to chimera and trying to flip the handedness of a cryo density map. I have opened the *.mrc file in chimera and its current ID # is 1. It seems I should use the command 'vop zflip #1' based on the online documentation I could find. The error output says: "Expected a density maps specifier or a keyword". I am running the current ChimeraX (daily). Apologies if I am missing something simple, but I could use some assistance. Thank you in advance. ~J
This command is for Chimera. I think you want “volume flip #1” for ChimeraX
On Feb 18, 2021, at 12:18 PM, Boyer, Joshua A <jaboyer@email.unc.edu> wrote:
Hello, I am new to chimera and trying to flip the handedness of a cryo density map. I have opened the *.mrc file in chimera and its current ID # is 1. It seems I should use the command 'vop zflip #1' based on the online documentation I could find. The error output says: "Expected a density maps specifier or a keyword". I am running the current ChimeraX (daily). Apologies if I am missing something simple, but I could use some assistance. Thank you in advance. ~J _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
Oliver is right. When you try "volume zflip #1" the log panel colors the "zflip #1" part in read saying it expected a keyword or model number -- that means it dod not like the "zflip". Tom
On Feb 18, 2021, at 9:34 AM, Oliver Clarke <olibclarke@gmail.com> wrote:
This command is for Chimera. I think you want “volume flip #1” for ChimeraX
On Feb 18, 2021, at 12:18 PM, Boyer, Joshua A <jaboyer@email.unc.edu <mailto:jaboyer@email.unc.edu>> wrote:
Hello, I am new to chimera and trying to flip the handedness of a cryo density map. I have opened the *.mrc file in chimera and its current ID # is 1. It seems I should use the command 'vop zflip #1' based on the online documentation I could find. The error output says: "Expected a density maps specifier or a keyword". I am running the current ChimeraX (daily). Apologies if I am missing something simple, but I could use some assistance. Thank you in advance. ~J _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu <mailto:ChimeraX-users@cgl.ucsf.edu> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users>
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participants (3)
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Boyer, Joshua A -
Oliver Clarke -
Tom Goddard