color interior of helix on cartoons?
Hello,
On the old chimera, it was very simple to color the interior of cartoon helices, but I cannot seem to find the documentation for this on chimeraX. Could you please tell me how to do this? Thank you!
Best,
Susanna Barrett (she/her/hers)
PhD candidate in chemistry at UIUC - Mitchell lab NSF Graduate Research Fellow Chemical-Biology Interface Training Program Fellow
Hi Susanna, ChimeraX does not have an option to color the inside of ribbon helix differently, sorry. Ribbons are calculated in a different way in ChimeraX than in Chimera. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 4, 2023, at 12:46 PM, Barrett, Susanna Elizabeth via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hello,
On the old chimera, it was very simple to color the interior of cartoon helices, but I cannot seem to find the documentation for this on chimeraX. Could you please tell me how to do this? Thank you!
Best,
Susanna Barrett (she/her/hers) PhD candidate in chemistry at UIUC - Mitchell lab NSF Graduate Research Fellow Chemical-Biology Interface Training Program Fellow
Hi Elaine,
Thank you for letting me know.
Best, Susanna ________________________________ From: Elaine Meng meng@cgl.ucsf.edu Sent: Thursday, July 6, 2023 10:58 AM To: Barrett, Susanna Elizabeth seb5@illinois.edu Cc: chimerax-users@cgl.ucsf.edu chimerax-users@cgl.ucsf.edu Subject: Re: [chimerax-users] color interior of helix on cartoons?
Hi Susanna, ChimeraX does not have an option to color the inside of ribbon helix differently, sorry. Ribbons are calculated in a different way in ChimeraX than in Chimera. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 4, 2023, at 12:46 PM, Barrett, Susanna Elizabeth via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hello,
On the old chimera, it was very simple to color the interior of cartoon helices, but I cannot seem to find the documentation for this on chimeraX. Could you please tell me how to do this? Thank you!
Best,
Susanna Barrett (she/her/hers) PhD candidate in chemistry at UIUC - Mitchell lab NSF Graduate Research Fellow Chemical-Biology Interface Training Program Fellow
It would be possible to add ribbon inside color to ChimeraX. We have a feature request to add ribbon inside color but have not implemented it because of limited resources.
https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/1719
Tom
On Jul 6, 2023, at 9:34 AM, Barrett, Susanna Elizabeth via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hi Elaine,
Thank you for letting me know.
Best, Susanna From: Elaine Meng meng@cgl.ucsf.edu Sent: Thursday, July 6, 2023 10:58 AM To: Barrett, Susanna Elizabeth seb5@illinois.edu Cc: chimerax-users@cgl.ucsf.edu chimerax-users@cgl.ucsf.edu Subject: Re: [chimerax-users] color interior of helix on cartoons?
Hi Susanna, ChimeraX does not have an option to color the inside of ribbon helix differently, sorry. Ribbons are calculated in a different way in ChimeraX than in Chimera. Best, Elaine
Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 4, 2023, at 12:46 PM, Barrett, Susanna Elizabeth via ChimeraX-users chimerax-users@cgl.ucsf.edu wrote:
Hello,
On the old chimera, it was very simple to color the interior of cartoon helices, but I cannot seem to find the documentation for this on chimeraX. Could you please tell me how to do this? Thank you!
Best,
Susanna Barrett (she/her/hers) PhD candidate in chemistry at UIUC - Mitchell lab NSF Graduate Research Fellow Chemical-Biology Interface Training Program Fellow
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participants (3)
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Barrett, Susanna Elizabeth
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Elaine Meng
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Tom Goddard