Hi I am making a figure using a pdb and a density map in chimeraX1.6.1. each time I do that I have coloured arrows representing an axis that is in the middle. how do I get rid of them. I am sure it is trivial but I just could not find the answers in the manual. thanks François -- François Ferron, Ph.D. francois.ferron@univ-amu.fr @F2erron@fediscience.org Laboratoire CNRS - UMR 7257 (AFMB) AFMB - POLYTECH Case 925 163, Av de Luminy 13288 Marseille Cedex 09 France & European Virus Bioinformatics Center, Leutragraben 1, 07743 Jena, Germany ######################################### Success is not final, failure is not fatal; it's the courage to continue that counts.
Hi François, Maybe it's turned on by ISOLDE? I don't think it is turned on by default if you just open a density map and a PDB. Regardless of how it got displayed, however, I think you can turn it off with the "cofr" command "showPivot" option, command: cofr showPivot false See <https://rbvi.ucsf.edu/chimerax/docs/user/commands/cofr.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 13, 2023, at 2:30 AM, François Ferron via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi I am making a figure using a pdb and a density map in chimeraX1.6.1. each time I do that I have coloured arrows representing an axis that is in the middle. how do I get rid of them. I am sure it is trivial but I just could not find the answers in the manual. thanks François
Hi Elaine Thank you so much that command line worked fine. You made my day! All the best François Le 13/09/2023 à 18:01, Elaine Meng a écrit :
Hi François, Maybe it's turned on by ISOLDE? I don't think it is turned on by default if you just open a density map and a PDB.
Regardless of how it got displayed, however, I think you can turn it off with the "cofr" command "showPivot" option, command:
cofr showPivot false
See <https://rbvi.ucsf.edu/chimerax/docs/user/commands/cofr.html>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 13, 2023, at 2:30 AM, François Ferron via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi I am making a figure using a pdb and a density map in chimeraX1.6.1. each time I do that I have coloured arrows representing an axis that is in the middle. how do I get rid of them. I am sure it is trivial but I just could not find the answers in the manual. thanks François
-- François Ferron, Ph.D. francois.ferron@univ-amu.fr @F2erron@fediscience.org Laboratoire CNRS - UMR 7257 (AFMB) AFMB - POLYTECH Case 925 163, Av de Luminy 13288 Marseille Cedex 09 France & European Virus Bioinformatics Center, Leutragraben 1, 07743 Jena, Germany ######################################### Success is not final, failure is not fatal; it's the courage to continue that counts.
participants (2)
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Elaine Meng -
François Ferron