Dear Chimera X team, I'm using Modeller in ChimeraX to build a homology model. Is there a way to look at the python script to know how it works? Thanks Mary
Hi Mary, Normally the Modeller tool writes the files it uses to a temporary directory and deletes it after it finishes. However, in the Modeller tool if you click on the "Advanced" tab, there is an option to choose a folder to use for those files. If you do that then they won't be deleted afterward. The python script will be named ModellerModelling.py. Note that if you are using the web service then for security reasons that file is not actually transmitted to the server, but it is showing you the script that the server executes. --Eric Eric Pettersen UCSF Computer Graphics Lab
On Jan 26, 2022, at 3:18 PM, Mary Liu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera X team,
I'm using Modeller in ChimeraX to build a homology model. Is there a way to look at the python script to know how it works?
Thanks Mary _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
Thank you very much, Eric and Zach. It works. Mary On Wed, Jan 26, 2022 at 3:57 PM Eric Pettersen <pett@cgl.ucsf.edu> wrote:
Hi Mary, Normally the Modeller tool writes the files it uses to a temporary directory and deletes it after it finishes. However, in the Modeller tool if you click on the "Advanced" tab, there is an option to choose a folder to use for those files. If you do that then they won't be deleted afterward. The python script will be named ModellerModelling.py. Note that if you are using the web service then for security reasons that file is not actually transmitted to the server, but it is showing you the script that the server executes.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Jan 26, 2022, at 3:18 PM, Mary Liu via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera X team,
I'm using Modeller in ChimeraX to build a homology model. Is there a way to look at the python script to know how it works?
Thanks Mary _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
participants (2)
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Eric Pettersen -
Mary Liu