Retrieving model_id / model_name via API
Hi guys, I am desperately looking to get the model_id / model name from all open volume objects. I have tried openModel.list()[0].model_id in many iterations but no success… I would like to iterate through models and identify the resampled ones. Can anybody help? Thanks, Lars P.S: API documentation would really be helpful.
Hi Lars, The model attributes for the ID are ‘id’/‘subid’ for the parts before and after any ‘.’ respectively, and the ‘name’ attribute has the model name. You would loop through all volume models with something like: from chimera import openModels from VolumeViewer import Volume for vol in openModels.list(modelTypes=[Volume]): print “%d.%d %s” % (vol.id <http://vol.id/>, vol.subid, vol.name) We realize the programmer documentation isn’t great. What little we have you can find here: https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html <https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html> . One of our objectives for ChimeraX is much better programmer documentation. —Eric Eric Pettersen UCSF Computer Graphics Lab
On Mar 6, 2019, at 10:40 AM, Lars Hangartner <lhangart@scripps.edu> wrote:
Hi guys,
I am desperately looking to get the model_id / model name from all open volume objects. I have tried openModel.list()[0].model_id in many iterations but no success… I would like to iterate through models and identify the resampled ones.
Can anybody help?
Thanks,
Lars
P.S: API documentation would really be helpful.
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Hi Eric, Thanks for the swift response, worked like a charm. May I also ask how to set the ’step’ property value from the volume viewer GUI pop-up from a script? Thanks, Lars
On Mar 6, 2019, at 3:40 PM, Eric Pettersen <pett@cgl.ucsf.edu <mailto:pett@cgl.ucsf.edu>> wrote:
Hi Lars, The model attributes for the ID are ‘id’/‘subid’ for the parts before and after any ‘.’ respectively, and the ‘name’ attribute has the model name. You would loop through all volume models with something like:
from chimera import openModels from VolumeViewer import Volume for vol in openModels.list(modelTypes=[Volume]): print “%d.%d %s” % (vol.id <http://vol.id/>, vol.subid, vol.name)
We realize the programmer documentation isn’t great. What little we have you can find here: https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html <https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html> . One of our objectives for ChimeraX is much better programmer documentation.
—Eric
Eric Pettersen UCSF Computer Graphics Lab
On Mar 6, 2019, at 10:40 AM, Lars Hangartner <lhangart@scripps.edu <mailto:lhangart@scripps.edu>> wrote:
Hi guys,
I am desperately looking to get the model_id / model name from all open volume objects. I have tried openModel.list()[0].model_id in many iterations but no success… I would like to iterate through models and identify the resampled ones.
Can anybody help?
Thanks,
Lars
P.S: API documentation would really be helpful.
_______________________________________________ Chimera-dev mailing list Chimera-dev@cgl.ucsf.edu <mailto:Chimera-dev@cgl.ucsf.edu> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-dev <http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-dev>
To set the step of a Volume model v in Chimera in Python code v.new_region(ijk_step = (1,1,1)) Tom
On Mar 6, 2019, at 8:42 PM, Lars Hangartner <lhangart@scripps.edu> wrote:
Hi Eric,
Thanks for the swift response, worked like a charm. May I also ask how to set the ’step’ property value from the volume viewer GUI pop-up from a script?
Thanks,
Lars
On Mar 6, 2019, at 3:40 PM, Eric Pettersen <pett@cgl.ucsf.edu <mailto:pett@cgl.ucsf.edu>> wrote:
Hi Lars, The model attributes for the ID are ‘id’/‘subid’ for the parts before and after any ‘.’ respectively, and the ‘name’ attribute has the model name. You would loop through all volume models with something like:
from chimera import openModels from VolumeViewer import Volume for vol in openModels.list(modelTypes=[Volume]): print “%d.%d %s” % (vol.id <http://vol.id/>, vol.subid, vol.name)
We realize the programmer documentation isn’t great. What little we have you can find here: https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html <https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html> . One of our objectives for ChimeraX is much better programmer documentation.
—Eric
Eric Pettersen UCSF Computer Graphics Lab
On Mar 6, 2019, at 10:40 AM, Lars Hangartner <lhangart@scripps.edu <mailto:lhangart@scripps.edu>> wrote:
Hi guys,
I am desperately looking to get the model_id / model name from all open volume objects. I have tried openModel.list()[0].model_id in many iterations but no success… I would like to iterate through models and identify the resampled ones.
Can anybody help?
Thanks,
Lars
P.S: API documentation would really be helpful.
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participants (3)
-
Eric Pettersen -
Lars Hangartner -
Tom Goddard