Re: [Chimera-users] in the docking process this message appear and does not continue, opal:vina_1.1.2 unavailable what i should do

Dear Elaine, Thank you very much Elaine, but i could get the interactions and bonds could you help me or guide me for another option waiting your reply ahmed On Thursday, April 30, 2020, 05:11:15 PM GMT+2, Elaine Meng wrote: Sorry, the Autodock Vina web service is no longer available. This was already discussed on the mailing list http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016738.html http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016752.html and is also shown on the Help page for this tool: http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html Somebody on the mailing list mentioned that there is another Autodock Vina web server called Webina https://durrantlab.pitt.edu/webina/ ...that you may be able to use directly (not in Chimera).  I have not tried it myself, but according to others, after you get the output file from Webina you may be able to open and view it with the ViewDock tool in Chimera as described in the second message below: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016762.html http://plato.cgl.ucsf.edu/pipermail/chimera-users/2020-April/016764.html Elaine ----- Elaine C. Meng, Ph.D.                      UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

On Apr 30, 2020, at 6:37 AM, Ahmed Tawfeek wrote:

Dear Professors and Doctors, I need the help I am trying to learn the work on chimera for the purpose of checking my compounds as organic chemist but i could not continue, because at the docking stage, the autodock vina does not work and this message appear,

the message " opal:vina_1.1.2 unavailable"

what is the solution

Best Regards

Ahmed Tawfik