On 4/21/20 8:40 PM, Kenward Vaughan wrote: ...
The command I use is > > intersurf :.b :.k,.m pair atom prune 3 bias 0.5 select > true > > followed by adjusting the transparency. The result surprised me, > both before and after lighting up the atoms and bonds. I've attached > a (hopefully small) jpg. > ...
By the way, I just realized with further experimentation that a prune distance of 3 gives NO result ("no interface found") using the graphical interface with chain B and either K or M. Changing this to 10 in my command still gives the same weird results... Kenward -- In a completely rational society, the best of us would aspire to be _teachers_ and the rest of us would have to settle for something less, because passing civilization along from one generation to the next ought to be the highest honor and the highest responsibility anyone could have. - Lee Iacocca Any fool can know. The point is to understand. - Albert Einstein