Are you using Chimera or ChimeraX? You're asking your question on the Chimera users mailing list, but the commands you gave are for ChimeraX. Chimera is no longer being developed. So the recommendation is to switch to ChimeraX, https://www.rbvi.ucsf.edu/chimerax/. For a synopsis of the advantages of ChimeraX over Chimera, see https://www.rbvi.ucsf.edu/chimerax/docs/user/advantages.html. HTH, Greg On 4/12/2025 4:35 AM, saverio via Chimera-users wrote:
Hi, I'm using the Attribute Assignment Files tutorial with the commands: *open <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/open.html#fetch> 1pho open <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/open.html#defattr> kdHydrophobicity.defattr <https://www.cgl.ucsf.edu/chimerax/docs/user/formats/kdHydrophobicity.defattr>
color byattribute <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/color.html#byattribute> kdHydrophobicity palette ^RdYlBu select <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/select.html#new> ::kdHydrophobicity>2.0 * I've only substituted 1pho with 1caz. For the command: color byattribute <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/color.html#byattribute> kdHydrophobicity palette ^RdYlBu I receive the error "color byattribute is undefined" with different version of chimera. Any suggestions? Thanks. Saverio * *
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