Thank you Elaine,
I know about the choice in the MM dialog however this runs 2 separate MSA.
The first method helped, where can I find these tools in ChimeraX?
Zaher
On 18/09/2020, 19:44, "Elaine Meng" wrote:
There is also a choice on the Matchmaker dialog to open Match->Align, "After superposition, compute structure-based multiple sequence alignment." That just starts the tool, exactly the same as choosing it from the Tools menu.
Elaine
> On Sep 18, 2020, at 9:39 AM, Elaine Meng wrote:
>
> Hi Zaher,
> Yes, but it is a separate step. After all three structures are superimposed in 3D (using Matchmaker or any other method you like), then you can use the Match->Align tool to create a sequence alignment of all three. Menu: Tools... Structure Comparison... Match->Align.
>
> https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.rbvi.uc...
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>> On Sep 18, 2020, at 9:19 AM, arrafzaher@campus.technion.ac.il wrote:
>>
>> Hi,
>> Suppose I have 3 structures #0 #1 and #2.
>> If I impose structure alignment of both #1 and #2 to #0.
>> I receive two MSA alignment.
>> Is there a way to view one MSA of the 3 structures and not 2 MSA of them.
>> Thanks,
>> Zaher
>
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