Re: [Chimera-users] Vina results

Hi Marco, This is really an AutoDock Vina question rather than a Chimera question, because Chimera is just showing the values it gets back. See the “Output” section of the AutoDock Vina manual: http://vina.scripps.edu/manual.html#output It is also important to realize that the AutoDock Vina web service used by the Chimera tool only allows very little sampling, not sufficient for most research purposes. For more thorough sampling and/or use of other options not available through the Chimera interface, you would need to download and use AutoDock Vina directly (not using Chimera). This is a “boxed warning" on the Chimera manual page for this tool: http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

On Jan 9, 2020, at 9:54 AM, Marco Sette wrote:

Dear all, running the Autodock Vina module returns a list of docked compounds. The resulting ViewDock table has 2 colums showing RMSD values. What they refer? Thanks for your help, Best regards, Marco