Re: [Chimera-users] Saving .pdb file in location of .mrc file

For the others on the list, although I’m not sure what solution you hit upon, the issue is discussed here, in “Saving Maps after Fitting” (bottom of page): http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#afterfitting Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco

On Jun 25, 2019, at 6:49 PM, Ryan Harlich wrote:

Hi Chimera,

I was able to figure this out after several hours. You can disregard the below email.

Best, Ryan Harlich

Sent from Mail for Windows 10

From: Ryan Harlich Sent: Tuesday, June 25, 2019 4:46:11 PM To: chimera-users@cgl.ucsf.edu Subject: Saving .pdb file in location of .mrc file

Hi Chimera,

I am having a bit of difficulty figuring out how to move the location of a map and save it in that location. I am able to move it but when I save and reopen it is back to where it is. I see I can use molmap and use onGrid to achieve this but this overwrites gridSpacing 1 which is crucial as I need to set the resolution to 1.

So the problem is when I save a molmap with gridSpacing after performing move cofr and reopen it, it is not in the location of my .mrc. If I use onGrid I cannot achieve gridSpacing 1.

An alternative if possible would be to have the .ent/.pdb saved to the new location where the .mrc density map is and reopened to this same location because then I can do the rest from there.

Best, Ryan Harlich

Sent from Mail for Windows 10

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