Hello, I have installed chimera in ubuntu 14.04.. I am finding difficult to get the .pdb format for diglyicne peptide (and further to create the topology and run the simulation in gromacs)... 1] If in Build Structure i select PubChem CID and type 11163 (Diglycine PubChem CID) i am getting error as:- Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssi.c:590) 2] I even tried through File - Fetch by ID - Pubchem and typed 1163 (Diglycine PubChem CID).. but in vain..i am getting the same error.. So can anybody kindly help....i am a novice here.. Any suggestions are highly appreciated.. Thank you... <https://mailtrack.io/> Sent with Mailtrack <https://mailtrack.io/install?source=signature&lang=en&referral=cy16f01.dilip...> On Sun, Aug 20, 2017 at 11:15 PM, Dilip H N <cy16f01.dilip@nitk.edu.in> wrote:
Hello, I have install chimers in ubuntu 14.04.. I am finding difficult to get the .pdb format for diglyicne peptide... 1] If in Build Structure i select PubChem CID and type 11163 (Diglycine PubChem CID) i am getting error as:- Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssi.c:590) 2] I even tried through File - Fetch by ID - Pubchem and typed 1163 (Diglycine PubChem CID).. but in vain..i am getting the same error..
So can anybody kindly help....i am a novice here..
Thank you... -- With Best Regards,
DILIP.H.N Ph.D Student
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-- With Best Regards, DILIP.H.N Ph.D Student