Hi Mario, The iterations are independent. So you could iterate twice, save a session, and then iterate further later. You could use the 'Save' button on the Reply Log to save info as needed. --Eric P.S. Sorry it's slow. It's all in Python and given how complex it is it's unlikely it's going to be recoded in C++ anytime soon. Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Oct 27, 2009, at 7:47 AM, Mario Borgnia wrote:

Hi, I launched a massive match-align procedure with five iterations without knowing that it would take so long to complete. Is it possible to stop it at iteration 2 without loosing the information computed to that point? Also, is it possible to continue from that point on in a subsequent round? Thanks!

Mario