Hi Michał, The fitmap code is in your Chimera distribution in chimera/share/FitMap The algorithm code is in fitmap.py and the command parsing is in fitcmd.py. There is a Python script fitnogui.py showing how to use this on the Chimera Python scripts page http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts <http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts> http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/fitnogui.py <http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/fitnogui.py> You probably want to use this with the Chimera Python “chimera --nogui fitnogui.py” because it uses C++ compiled libraries compiled for the Chimera Python. Tom

On Oct 25, 2016, at 5:48 AM, Michał Kadlof <m.kadlof@cent.uw.edu.pl> wrote:

Is there any pythonic way of running fitmap tool? I would like to use it as a function that return parameters that I can assign to variable without parsing the output. I didn't find anything similar in Midas module.

-- ​best wishes,​ Michał Kadlof <m.kadlof@cent.uw.edu.pl <mailto:m.kadlof@cent.uw.edu.pl>> _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users