pythonic version of fitmap tool
Is there any pythonic way of running fitmap tool? I would like to use it as a function that return parameters that I can assign to variable without parsing the output. I didn't find anything similar in Midas module.
-- best wishes,
Michał Kadlof m.kadlof@cent.uw.edu.pl
Hi Michał,
The fitmap code is in your Chimera distribution in
chimera/share/FitMap
The algorithm code is in fitmap.py and the command parsing is in fitcmd.py. There is a Python script fitnogui.py showing how to use this on the Chimera Python scripts page
http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts
http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/fitnogui.py http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/fitnogui.py
You probably want to use this with the Chimera Python “chimera --nogui fitnogui.py” because it uses C++ compiled libraries compiled for the Chimera Python.
Tom
On Oct 25, 2016, at 5:48 AM, Michał Kadlof m.kadlof@cent.uw.edu.pl wrote:
Is there any pythonic way of running fitmap tool? I would like to use it as a function that return parameters that I can assign to variable without parsing the output. I didn't find anything similar in Midas module.
-- best wishes, Michał Kadlof <m.kadlof@cent.uw.edu.pl mailto:m.kadlof@cent.uw.edu.pl> _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (2)
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Michał Kadlof
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Tom Goddard