Hi Jingwei, Sorry, there is no Scale Bar tool in ChimeraX currently. You could create a 3D object of the desired length but you would have to position it carefully in the same plane as your other structure(s) and in a horizontal orientation, and then add the label on it with the “2dlabel” command.
Ways to create the 3D object are all by generating a file and reading it in:
(1) read in a BILD file that defines a cylinder of the desired length http://rbvi.ucsf.edu/chimerax/docs/user/formats/bild.html
… this file could be very simple, for example just containing one line of text:
.cylinder 0 0 0 0 0 20 1
(values are x1 y1 z1 x2 y2 z2 radius)
(2) read in a PDB file with two atoms the desired distance apart and bond between them
(3) read in a marker file with two markers the desired distance apart and link between them http://rbvi.ucsf.edu/chimerax/docs/user/markers.html#markerfiles
A different approach is to save the image with a specific pixelSize per physical distance and then use some image-editing app to add a bar of the desired number of pixels and its label. http://rbvi.ucsf.edu/chimerax/docs/user/commands/save.html#image
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 13, 2018, at 5:54 AM, Xu Jingwei jingwei.xu@mol.biol.ethz.ch wrote:
Hi, I recently installed the ChimeraX in my centos 7 and it is really powerful software to make beautiful figures. I really like it! However, one question before I setup for figures is how could I make a scale bar in ChimeraX? I did not find the relative information in the web. Could you please help me about that? I am really appreciated for that.
Best,
Jingwei